I am not at all worried. These people were sick and the ketogenic diet they were on is not anywhere near the same as how I am eating. If you were eating 90% of your calories from fat, there is little room to get any vitamins and minerals without supplementation. And in my opinion, supplementation is far inferior to getting vitamins and minerals from food.
Also, there was another study where they followed up for 2 years.
43 children ages 2–15 years were started on dietary therapy; 84% on a standard 4:1 ratio ketogenic diet. They all had carotid ultrasounds at baseline, 3, 12, and 24 months, along with fasting serum lipid profiles. The carotid arteries were less “distensible” at 3 and 12 months but returned to normal by 24 months, and there was no difference in the intimal wall thickness.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4325592/
So with 84% of the subjects on the strictest version of ketogenic diet, they initially had some stiffening of the arteries in the beginning but it had returned to the baseline by 24 months.
I agree that there needs to be some study of this subject. But what are the odds that every other marker of health would be better but that the arteries would harden? What would the mechanism be that would cause that?
Arteries are made, in part, of muscle and collagen. To me it makes sense that if there is not enough protein in the diet, as in the classic ketogenic diet, that it would have a negative impact on artery health.
I think that you are overreacting.